In a tweet made a few months after Chapter 2's release, development staff member Samanthuel Gillson shared an early sprite sheet of Hacker featuring a considerably different design compared to the final game, depicting his body as the shaft of a pointer icon rather than making the entire symbol his head. While these were ultimately done away with after Hacker's design was revised, one sprite depicting him pointing forward is still present in the game's code.

Of note is that Hacker's head turning into a click icon is present in the sprite sheet in Gillson's tweet, indicating that this component of Spamton's sidequest (in which the click icon indicates an area that Kris must check in order to access the mansion basement) was already conceived by this point. Consequently, it is unknown what the leftover pointing sprite was made for.

After completing the light puzzles, Berdly will accuse Susie of cheating, akin to when she "wavedash[es]". This is a nod to the exploit that originated in Super Smash Bros. Melee. It's fitting that Berdly says this, as his Dark World design resembles a mix of Fox McCloud and Falco Lombardi from the Star Fox series, who are two of the most popular characters used in the competitive scene for Super Smash Bros. Melee.

In the original release of Chapter 4, Susie's response to Catty drinking a bowl of milk in Hometown's alleyway read "(That's MY free milk, you furry degenerate...)". In the Version 1.01B update, this line was slightly rewritten to instead have Susie call Catty a "furry freak." No explanation was given for this change in the official changelog, which does not mention it whatsoever.

Within the data for Chapter 4 are unused sprites depicting Susie playing a handheld video game while hanging out with Noelle. Concept art for this was shown off in a tweet by Toby Fox in 2022, alongside artwork of two other character interactions. Notably, the Susie and Noelle scenario is the only one shown in the tweet that isn't featured in the final game.

In Spoiler:the Weird Route version of Chapter 4, one pivotal scene depicts Spoiler:Kris, possessed by the SOUL, forcing Noelle to re-don the Thorn Ring from Chapter 2 by slowly creeping towards her as she backs away in fear across a couch. In the original release of the chapter, this gives way to an animation Spoiler:of a rose blooming and then crumbling against a black screen, located in the same place as Noelle's sprite. In the Version 1.01A update, this was replaced by Spoiler:a single red pixel, possibly as a placeholder graphic, which in turn was replaced in Version 1.01C with another animation depicting cracking red glass. The original animation is outright removed from the game's files in these later updates rather than being merely disabled.

The reason for this alteration was not explained in the official changelogs, which vaguely described the changes as a "Small graphical alteration to a certain scene" and "Strengthened imagery while maintaining a scene's intended meaning". The animation changes were likely made initially in response to complaints and discussion among players who misinterpreted the scene as Spoiler:Noelle being forcibly "deflowered" (taking her virginity, in this case through rape) literally, in addition to being driven insane, and then to counter-complaints Spoiler:lamenting the reduced impact when the single red pixel was implemented.

Both earlier revisions of this sequence are referenced if the player continues the Weird Route into Chapter 5. Spoiler:The chapter's opening cutscene on the route depicts the same red pixel as the Version 1.01A rendition, after which Noelle is heard echoing her line, "thank you," which follows the Thorn Ring sequence in Chapter 4. If the player aborts the route during the lake scene, Kris' title is changed to "Shattered Rose," with the accompanying description reading "Only one knows the rose's meaning." While not the only "rose" title in Chapter 5, the specific use of the descriptor "shattered" aligns with the crumbling animation from Chapter 4's initial release.

Within the data for Chapter 2 is a placeholder graphic for Queen's arcade cabinet that depicts it with green paneling and the word "Xbox" crudely written on the marquee. Despite the fact that it was never intended to be featured in the normal course of play, the sprite was altered in the version 1.06 update to remove the "XBOX" text, presumably to avoid potential trademark issues.

In Chapter 2, when Queen challenges Kris to an arcade match, the arcade cabinet presented is so large that Kris is unable to reach the controls. While the released game conveys this solely through narration, its internal data contains an unused animation depicting Kris reaching up towards the cabinet's joysticks. It is unknown why this was removed, given that it fulfills the same function as the textual description.

In the Undertale sixth anniversary livestream, Toby Fox stated that the scene in Chapter 1 where Susie holds off from attacking Kris due to her respect for Toriel was inspired by a real encounter with a bully that he had. According to Fox, the bully knew his mother and stated that they would've beaten him up if she wasn't nice to them.

In an interview that Toby Fox conducted with the Chapter 2 development team, Taxiderby, one of the game's programmers, stated that the Spamton cherub that appears when pressing F1 during the Spamton and Spoiler:Spamton NEO fights was a spur-of-the-moment suggestion. According to them, Spamton's line "[Press F1 For] HELP" was already written, but it was originally a meaningless non-sequitur. After Fox suggested the idea of giving F1 an actual function in the fight, Taxiderby came up with the Final Fantasy-inspired Easter egg, putting it in singlehandedly after Fox gave his approval for the idea. In the same interview, they stated that they were surprised by its popularity, having made it purely as a throwaway gag.

Although Chapter 1 was given a surprise release in 2018, with Toby Fox giving no prior public indications of its existence, Deltarune had been teased in secret since at least 2015. Three months after Undertale released, the fan site DeltaRune.com announced that it would be rebranding to Dreemurr.com at Fox's request; Fox didn't tell the owners of Dreemurr.com why he didn't want them to use the domain. However, after the fan site fulfilled his request, Fox used deltarune.com to host an image called him.png, a passage of Wingdings text only readable by turning up the brightness using image editing software.

While the text initially parroted the phrase "THIS NEXT (space) EXPERIMENT (space) SEEMS (space) VERY (space) VERY (space) INTERESTING" from the unused room_gaster event in Undertale, by July 1, 2016, the text was edited to read "THREE HEROES APPEARED (space) AT WORLD'S EDGE", later being edited again by August 17 to say "THREE HEROES APPEARED (space) TO BANISH THE ANGELS HEAVEN". Both revisions quote portions of the legend that Ralsei recounts in Chapter 1, indicating that these parts of the game's backstory were already conceived by this point.

Following the release of Chapter 1, deltarune.com would be refurbished as the official website for Deltarune itself. Consequently, earlier versions of the site only survive through snapshots on the Wayback Machine, a URL archiving platform hosted by the Internet Archive.

In 2012, Toby Fox posted several Yume Nikki fan songs to his Tumblr account. One of these, "waltz of seccom masada" (named after a fan nickname for the piano-playing NPC in the spaceship area), bears strong similarities to the Deltarune track "Man" (heard in the hidden rooms where Kris can obtain an egg from the Forgotten Man, an invisible NPC behind a tree), indicating that Fox repurposed and rearranged the song for his own project years later.

A second, 8-bit rendition of the song is present in the same Tumblr post. This version would appear unaltered in Mancountry, the hidden egg room in Chapter 3.

In Volume 5 of his Famitsu column "Toby's Secret Base", creator and director Toby Fox revealed that Ralsei's name came from a period in elementary school where he and his brothers constantly experimented with RPG Maker, having long had a shared interest in game development. Fox's oldest brother spent years working on a game called New Genesis, which featured a protagonist named Ralse; Fox simply appended an "i" to the name when incorporating it into Deltarune years later.

In the same column, Fox stated that the prolonged development of New Genesis discouraged him from making games for a long time. When he finally returned to the field in his teenage years, he sought to temper his expectations from the outset by making smaller-scale titles and preemptively planning out his approach to development to avoid biting off more than he could chew.

After Queen realizes that she didn't capture Ralsei out of all of the Lightners due to not having enough cages, the sound effect that plays with the Iris Out zooming in on her face is the same sound effect used on the Iris Out on Mario when completing a level in Super Mario World.

When looking into one of the grocery baskets filled with fruit in Sans' grocery store, it states that it contains "(Grapes, melons, oranges, and the scent of fresh pineapples...)". This references the DK Rap from Donkey Kong 64, specifically the outro line "walnuts, peanuts, pineapples smells, grapes, melons, oranges, and coconut shells".

One of Mauswheel's battle dialogue is "(Rolling around at the speed of mouse...)". This is a reference to "Rolling around at the speed of sound", the opening line of the song "Escape from the City" in Sonic Adventure 2.

When speaking to Father Alvin about Asriel near the end of Chapter 2, he will mention about how Asriel used to beg for forgiveness for "dropping the lizard in the pit to jump high" in a video game. This is a nod to an exploit often used in Mario games, starting with Super Mario World, in which the player can jump off of Yoshi into a bottomless pit in order to land safely on a platform that they missed.

When speaking to Toriel at the end of Chapter 1, she'll mention how Asriel loved playing as the "green, egg laying lizard" from the game "Super Smashing Fighters," a reference to Yoshi in Super Smash Bros.

Toriel will also mention a related incident in which Asgore painted green spots on eggs as part of a birthday party for Asriel themed around the lizard (referencing Yoshi's eggs). The following morning, Asgore cooked the eggs for breakfast, which upset Asriel enough that it caused him to hate the book about "eating green eggs". This is a nod to the Dr. Seuss book "Green Eggs & Ham".

The CHECK description for Spoiler:the Pipis enemies, which can only be encountered on the Weird Route, reads "Pipis - ''The Original'' An invasive species of freshwater clam." This appears to reference two real-world entities that Spoiler:are also called Pipis. The first portion of the description seems to nod to a restaurant in Puerto Vallarta, Mexico, which uses the tagline "The Original." The second portion, meanwhile, references a pair of edible saltwater clam species in Australia and New Zealand; the use of these clams as food is further referenced with Spoiler:Kris' "Fried Pipis" ACT during the Spamton NEO fight at the end of the Weird Route.

Within the data for Chapter 2 is an alternate, sped-up version of "Digital Roots" that lacks the ambient wind sounds. The existence of this track is a marked deviation from the rest of both Deltarune and Undertale, which otherwise speed up and slow down tracks in real time.

The filename for this unused variation is "spamton_house.ogg"; as "Digital Roots" itself uses the filename "spamton_basement.ogg", this seems to imply that the faster version was originally meant for Spamton's shop, which instead uses "Dialtone" (named Spoiler:"spamton_neo_after.ogg" in the game's files) in the final game.

If the player backtracks through the Starwalker's room in the Forest after ringing the bell to scare them off, they can encounter an NPC called "The Original Starwalker." Speaking to this character causes them to reappear in the castle basement's animal cage room.

Importing a Chapter 1 save file to Chapter 2 after discovering the Original Starwalker results in the latter entering Kris' key items alongside Lancer and Rouxls Kaard, briefly exiting to accompany them at the carnival and appearing as part of the Thrash Machine's transformation scene.