Contrary to popular belief, General Scales was never actually intended to be the primary antagonist and final boss of Dinosaur Planet, even before the transition to Star Fox Adventures, which jammed in Andross in the climax. That role would belong to Drakor, who appears in the final Star Fox Adventures as a turret boss in Dragon Rock.

Drakor's original backstory was that he belonged to an ancient race of alien dragons known as the Kamerians, that existed in the early days of the universe along with another race known as the Krazoa. The two races had a big intergalactic war with each other that nearly destroyed the galaxy and it ended above orbit of what would eventually be known as Sauria, the Dinosaur Planet, with the Krazoa narrowingly winning. One of the last great war dragons was killed in battle and its body fell onto the planet's surface, and it became something of a god figure to Sauria's dinosaur inhabitants who spawned right around the same time.

Drakor, recently banished by his people who deemed him a threat to their society, became aware that the Kamerian dragon, now reduced into a heart, was on Sauria, so he invaded and helped General Scales and the SharpClaw by providing them advanced weapons and technology so that they could take over the planet and also its Force Point Temples, as they planned on channeling all of Sauria's magical energies and pumping it into the Kamerian heart within Dragon Rock, which would revive it and allow Drakor to destroy the planet and gain ultimate revenge on the Krazoa, who still dwelled there in stasis lock.

The twist was that, despite obviously his methods involving genocide and conquest, Drakor was actually trying to save the galaxy in his own way: The Krazoa themselves were also revealed to be actually extremely evil. As they go back in time to the time of the Great War in Krazoa Palace, Krystal and Kyte discover that the Krazoa were the ones who started the Great War against the Kamerians, because the latter didn't wish to be ruled by them and their god, the "Quan Ata Lachu". They manipulated Sabre and Krystal into finding each of the Quan Ata Lachu spirits hidden away in their shrines/test and depositing them at Warlock Mountain, planning on aligning the Majestic Eight planets their home world Animus and Dinosaur Planet belong to, promising that it will bring "peace" to the universe, when in reality they want nothing more than to set it into flames and remold it into their image/liking, spreading disease, terror and chaos as they please.

The final Star Fox Adventures game saw all of this scrapped in favor of Andross as the main antagonist. Drakor would be repurposed as a subordinate of General Scales, a mutant bioweapon that dwells within Dragon Rock as the guardian of the one of the SpellStones Fox (who similarly replaced both Sabre and Krystal as the main playable character) must collect. The Krazoa were more or less condensed into the Quan Ata Lachu spirits Fox must also collect, and also essentially replaced the Kamerian Heart as the deities the inhabitants of Dinosaur Planet worship.

As mentioned before, Andross' spirit would fulfill Drakor's original role as the manipulator behind General Scales and the SharpClaw's uprising, and would also fill in for the Krazoa's role, posing as one as he manipulates Fox into finding the Krazoa Spirits in promise of rescuing Krystal from her prison atop of Krazoa Palace (which was reworked from DP's Warlock Mountain), all of which results in his resurrection as the game's final boss.